PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0149s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 327aa    MW: 35715.6 Da    PI: 7.8263
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0149s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.28.5e-3358114257
             ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                             ++v YkeClkNhAas Gg a+DGCgEfmp+++++  ++a+lkCaACgCHRnFHRre+
  SapurV1A.0149s0160.1.p  58 TEVSYKECLKNHAASFGGLALDGCGEFMPKPTTTpQDPASLKCAACGCHRNFHRREP 114
                             5799****************************9999*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2160114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-2860113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3062113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.20662113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-26185253IPR009057Homeodomain-like
SuperFamilySSF466891.12E-15185253IPR009057Homeodomain-like
TIGRFAMsTIGR015654.7E-25191248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTKAMDLTSI PHHISKSPDS DTDTETPLQT HLTKALSLNG SYKTHQNHCF APPPEQHTEV  60
SYKECLKNHA ASFGGLALDG CGEFMPKPTT TPQDPASLKC AACGCHRNFH RREPFGPATL  120
MQPALNWTTS PSPGSTSSGP SPSPTSPASP TPQSFYPSAP HMLLALSTGH PDDTQLQIQG  180
HSLVMTSSHG KKRARTKFSR EQKERMYLFA EKLGWRMPRG NNDRDVEEFC SEIGVNRNVF  240
KVWMHNNRSR KEKVSDSYGI DSSNRCGFNV NEELAAGTVN GTDNKGYSFD NDDNGSSHDR  300
CQIESKVHVN GSMNPHGSST SSLIKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-171922491874ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485561e-146EF148556.1 Populus trichocarpa x Populus deltoides clone WS0134_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017078.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-59ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLB9HI661e-173B9HI66_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08560.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-53zinc finger homeodomain 1